NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10003038

Scaffold Ga0209229_10003038


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10003038 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6962
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F002489Metagenome / Metatranscriptome554Y
F008132Metagenome / Metatranscriptome338Y
F009530Metagenome / Metatranscriptome316Y
F010085Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_100030381F000447GGAGMGYIEIFRINENGAGWVDLSEATPDEMLDLEIGLFQEGAL
Ga0209229_1000303812F002489AGGAMTEENIQPTPLDENLPMVNYIMLHRIYDLLTLIANKLVGPEDVSKMISYHDQGFLLGPQPSYTPSPEEESQ
Ga0209229_1000303814F010085AGTAGGMKIQYVSRYIALSEEGLVPRLQCPMDQGLLLCNQDNSDMLYLYCLSCEYKNFMGSQFYDQIVTSVKKVESI
Ga0209229_100030383F008132AGGAGMTKWDTIQADVADAYTHFDEEDAYNQMLDDEEDTFGFIKAINIDHLTDEQLDEVFNMFGD
Ga0209229_100030384F009530AGAAGMTITYSIWQGSRLLSIDNVAHDVKAIDHLIQSLNASELGKGTKFTANVMTIKAGE
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