Basic Information | |
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Taxon OID | 3300027805 Open in IMG/M |
Scaffold ID | Ga0209229_10003038 Open in IMG/M |
Source Dataset Name | Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6962 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (64.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Sandusky Bay, Ohio, USA | |||||||
Coordinates | Lat. (o) | 41.474889 | Long. (o) | -82.854137 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000447 | Metagenome / Metatranscriptome | 1128 | Y |
F002489 | Metagenome / Metatranscriptome | 554 | Y |
F008132 | Metagenome / Metatranscriptome | 338 | Y |
F009530 | Metagenome / Metatranscriptome | 316 | Y |
F010085 | Metagenome / Metatranscriptome | 308 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209229_100030381 | F000447 | GGAG | MGYIEIFRINENGAGWVDLSEATPDEMLDLEIGLFQEGAL |
Ga0209229_1000303812 | F002489 | AGGA | MTEENIQPTPLDENLPMVNYIMLHRIYDLLTLIANKLVGPEDVSKMISYHDQGFLLGPQPSYTPSPEEESQ |
Ga0209229_1000303814 | F010085 | AGTAGG | MKIQYVSRYIALSEEGLVPRLQCPMDQGLLLCNQDNSDMLYLYCLSCEYKNFMGSQFYDQIVTSVKKVESI |
Ga0209229_100030383 | F008132 | AGGAG | MTKWDTIQADVADAYTHFDEEDAYNQMLDDEEDTFGFIKAINIDHLTDEQLDEVFNMFGD |
Ga0209229_100030384 | F009530 | AGAAG | MTITYSIWQGSRLLSIDNVAHDVKAIDHLIQSLNASELGKGTKFTANVMTIKAGE |
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