Scaffold Ga0209229

Basic Information
Taxon OID	3300027805 Open in IMG/M
Scaffold ID	Ga0209229_10009188 Open in IMG/M
Source Dataset Name	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027805 Open in IMG/M

Scaffold ID

Ga0209229_10009188 Open in IMG/M

Source Dataset Name

Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4154
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4154

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Sandusky Bay, Ohio, USA
Coordinates	Lat. (^o)	41.474889	Long. (^o)	-82.854137	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sandusky Bay, Ohio, USA

Coordinates

Lat. (^o)

41.474889

Long. (^o)

-82.854137

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F046994	Metagenome	150	N
F059678	Metagenome	133	N
F061576	Metagenome	131	Y
F081233	Metagenome	114	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209229_100091883	F046994	N/A	MIFRKRNRAEQNESNYQKWLKSYIPETTKQRIELTRVFTDRAGNNFYILKNPANLTRERAQRIEESMTAIDFGINKTEVVEKLNGMLEIVEDMPWQNMTRDKLKEFHTKSKDQLNDILYRLKNVKIDDLLLEAGLYFFYIDGENPYIINSETQQRKMDAIKKDDELRAFFLNSIEQILKGSSALNV
Ga0209229_100091886	F059678	N/A	MKTLLFILLFSAAAYAQTDTMYCIQILSTRHPEFIRAEHLAMCTLEQAMVEQTDSLYRIMFVYDTYEEAEIMLTTWKRAHKDAFICRRTKKQISKYYPFFSYD
Ga0209229_100091888	F061576	N/A	MKESDWVRKLILSSNYENIELGLIMNLSFKYYPLTAKFYKKNAKYKFWQPSRNYSVIETENRYYSWVALLNNELKTHRCYFWLDFKEPKFKTPWQAWQQHITSGAKWAYNGPLFNYPSHPYTSMFMS
Ga0209229_100091889	F081233	N/A	MLYRPKIKVYSESEIEYWKHLINEKRRQNKTLQRWLVVSDVHRPFHNQILWQKLLRLISELGTNLHGLVLAGDYLDLYTLGSYNAESLANLSGLTLQDEYIDGLQGIDDINSAFKGAKKYFLFGNHEDRYFRHIKEKDNAKYGGALINPTEALYLHERGWEVKTDWQSDYFTLGKHLDIVHGIYTSIHAAKAHLDKTQHSVMFGHTHRVQCYHTGNKAAFNIGGLFDIKSKGFFYMPRFQRQLWANGFAIVNVTDNGDFYVEQVNVWADKFLANGKMY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209229_10009188

Overview

Ecosystem & Geography

Associated Families

Sequences