NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10033397

Scaffold Ga0209229_10033397


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10033397 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2261
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018539Metagenome234Y
F043926Metagenome155Y
F064710Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_100333971F064710AGGAMQDNIKEKLTSLMLQMQDIIMEDYEDNEDIQDAFNALASA
Ga0209229_100333972F018539AGGAGMLSTAFNTLAKAKLVYNKQKELYKLVVAFNVHTKIKDNGDIVHIFPTQAKCAYVSGDINYEELQAEVSRLTETAKKQLRTDNIEFV
Ga0209229_100333976F043926GGAGMVKWECQMFYKDKLYTGHYWTDELSLARARRKVAELQRYHPAMRFTLTDWEKGSIINLHTNTKELA
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