NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10064356

Scaffold Ga0209229_10064356


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10064356 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1642
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017972Metagenome237Y
F055450Metagenome / Metatranscriptome138Y
F068766Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0209229_100643562F017972GGAGGVRTGHLQLVTHEHSVTIKTRSGASSPYGPVNPASTTLLAQETLRANQEARLTELLNSLENVVDNLNYKSFTVYDTLTIAMENLRVALSNIATDADGTDTL
Ga0209229_100643563F055450GGAGGMETNKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKQTDEQEGKTWIDLDGNTIPVVGVRVRTTEGRGAPILKENIHRSTDEGNDGGEA
Ga0209229_100643565F068766AGGAGGMTTDNVVGFHPKNKLVNFYEIATAEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLMIEPIDITKIVFAVMAGAQ
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