NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209985_10060816

Scaffold Ga0209985_10060816


Overview

Basic Information
Taxon OID3300027806 Open in IMG/M
Scaffold IDGa0209985_10060816 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2058
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019600Metagenome / Metatranscriptome228N
F033695Metagenome / Metatranscriptome176N
F033705Metagenome / Metatranscriptome176N
F100445Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209985_100608162F033695AGTAGMEGFNQEFKLAMEEVQELTKRAAIYSSQEYNKPMKIDIKAIQYYRIEVNKRIDYIQEMMEIFPFKTDIFYLWKIHQNILKLLSMILSNEDQKDRCQKLNSYEKVLEKFKNETDYSYWKDYISIHENKILGGS
Ga0209985_100608164F019600N/AMYAPDTDTVELKMGYNSEKSLKEARETVYEGRKAVEELNSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSITAYRRYKGDAILTSNLKALNSEISKTTSLVSSSDIGEMKEIIEKLANWELNEQ
Ga0209985_100608165F033705N/AMEDPVVAIHPLDYLFQGLEAAEVLKLHLVSLIKEEANRLKNLKLKLNSIRKLVEVNQANSRKLIQIFQEDQNIMPLVAKFITILTELDEISACNTISEMIGVLNKITECMLQIQIQLN
Ga0209985_100608166F100445N/ATPIVNEAQAKLIPLAFDLNNRIWMEGYVLCCSFLENAAQILQIQIMDGQGFETMIEYDVELNTHINQVLNILNKEQSITPDMTVWVMSLLNHMLYLKNIVFNPDPSDLIKFIKPLQIIKLNIKESRVLMEGALTWVDKKMMMQ
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