NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209208_10003525

Scaffold Ga0209208_10003525


Overview

Basic Information
Taxon OID3300027807 Open in IMG/M
Scaffold IDGa0209208_10003525 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22379
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (43.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047442Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209208_1000352526F047442GAGVHDLNPNCTANNPNLTIFFFHGIAYGIDDDWKQTWTTHPINGKGECICWPQMWIAKDLNDNVKILSLSYDSNVVASVHNDVTKIGQNLIQSLVTDSRCDNFLIYVHLIFHCVFQLKIIDCILTSLNTLFMWNIIVVHIRS
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