NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209208_10143049

Scaffold Ga0209208_10143049


Overview

Basic Information
Taxon OID3300027807 Open in IMG/M
Scaffold IDGa0209208_10143049 Open in IMG/M
Source Dataset NameHost-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1457
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024943Metagenome / Metatranscriptome203Y
F082045Metagenome / Metatranscriptome113Y
F098502Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209208_101430492F082045N/AMQGVLFILESWIDLTTWVEEIQLVAMEITKSKPSRIWCMIECVKQHHENHKHESFCLTPSLFLDITCNPRHELKLDLWESEKIHKGKLQARREKQMARVKPYEKI
Ga0209208_101430493F098502N/AMLGEASDSPGTQFPQNRQQTPSLTLGITRLRSPIRRPLEEPRIVGELGVVISQLRRRREESKPQLDPEFVKQRQRTITQEQHLFIWLRKKDATLDYAKTNNLHVMWSGGIIDTCDGHDLVNVVFQSRHLNRMIAGLEMFGPFINLQQEDRENFIMSANRAIGNFLIHKERL
Ga0209208_101430494F024943N/AMIILVFRGSKGEDPEVFLREYKWACIGMGLRTVAEWLNFLLEFLEVTASHWFE
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