NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209302_10000227

Scaffold Ga0209302_10000227


Overview

Basic Information
Taxon OID3300027810 Open in IMG/M
Scaffold IDGa0209302_10000227 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35226
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (19.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8669Long. (o)-3.2286Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002033Metagenome / Metatranscriptome601Y
F061854Metagenome / Metatranscriptome131Y
F070154Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209302_1000022736F061854N/AMLKKIKSKLLTYLFTDWVKTEKDIDLLLMTKKMIDDRKNEVVGHTPIIGFRCHSSNNIY
Ga0209302_1000022759F070154AGGMIKYSTRLVFILRNIVIKIPVTRKGYLQGINEKKIWNKYNSIASLAELKWTWMGIVCQKRYNTVSSIPSEIVKSKKELIPEFDFDNCDLYNPENWGIDNKTYVLLDYGVNKYIAGLYKL
Ga0209302_1000022771F002033N/AMNKLDTFLSKHGSKIIIALLVLTYFKSCGIDSDVEKVKKDQRALVAEVDSLQSQLNRTIITEDLMIDLIKTVPAWKTLRIEEISDKERISINALEQKEK
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