NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209302_10000295

Scaffold Ga0209302_10000295


Overview

Basic Information
Taxon OID3300027810 Open in IMG/M
Scaffold IDGa0209302_10000295 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30239
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (12.28%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8669Long. (o)-3.2286Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000751Metagenome / Metatranscriptome907Y
F002629Metagenome / Metatranscriptome542Y
F006815Metagenome / Metatranscriptome364Y
F011006Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0209302_1000029526F011006AGAAGMKKIIDKFLIKRSIRPYKVVPLPTGVIVEHYRNGKLKTEYYGLV
Ga0209302_1000029540F002629N/AMKVNEAAWEKLKKQIEYYTDADTSISDISINYQVKETKNRNYLRLNITIDKWDKITN
Ga0209302_1000029554F006815N/AMGTNFSQETAQTKFDEYTYRIEALCNRIEELKAKIEVSQIFKQ
Ga0209302_100002956F000751N/AMNIYKTNFPTEQEGKDYLLSIGVLVETDNEIVFAKDTAAVVYIGKVVKIPATYDADGNELTPPIYYDGYAIDVMSSLDLDFGAFMVYPIEAAHSFYGYARNAEVPPTKKK
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