NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209302_10044901

Scaffold Ga0209302_10044901


Overview

Basic Information
Taxon OID3300027810 Open in IMG/M
Scaffold IDGa0209302_10044901 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2383
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8669Long. (o)-3.2286Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001217Metagenome / Metatranscriptome745Y
F065127Metagenome / Metatranscriptome128Y
F103277Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209302_100449012F103277N/AMKQELQNKVNELKLTLGSLELNAKTVKDDLIEATKKLEAVSKPIITKEIVEQIREAVHQAIKQISFNSVDSYDVDFEIDYNNSLALGSIEFNEVDEIEESVCDYVEDIFNIIED
Ga0209302_100449013F065127N/AMSAIHQRASDKAFAKIEMLGFLIQTDERNLAIGSYGGDISLSDFMLVVEGNKTELKVWQYIAELIEKSNKIQQ
Ga0209302_100449015F001217N/AMSRTKFNGFEKYFITTALNHAIEEAESDIKKLVSEGKRPMYAEGYFTMVGKELIAKVNNMTLKRDQ
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Institute for Fundamental Biomedical Research
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