NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209656_10000031

Scaffold Ga0209656_10000031


Overview

Basic Information
Taxon OID3300027812 Open in IMG/M
Scaffold IDGa0209656_10000031 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101256
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (68.13%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000214Metagenome / Metatranscriptome1570Y
F009346Metagenome / Metatranscriptome319Y
F013349Metagenome / Metatranscriptome272Y
F037320Metagenome / Metatranscriptome168Y
F074116Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209656_1000003110F037320AGGAGGMVSVSIYRHLLRLYPAFHRERFGEEMTAVFGELQAENVSKGMLARGVFYLRETGGVVSGALQEHWRALGGDTVWLWFPTRRFMMRNQFRFPKATAVLMAIILGGVVVAIQKGEAISASLQDAVSPPIGPIHPVHSVLLGGIVMCLLFFYAAGLIGWAILFAMRRSGVHRLAETSAESK
Ga0209656_1000003128F013349AGGAMRVHRTGLCVASVLVFNILAQAVPYAVFPKAGQLPSPDGRFVVRNIDPVAPASEYVGTFHSLFLEDTASGRTRKLCDYVGVAALAWTRNNSLIMTEYLSKHTSRVRIFSADEARDPVVIDQSLLTRLVPVDLRPQIRENDHVFVEASQIEGQMLTLGVWGYGRHDANGFRWRCQYSLLEGSISCQETPASK
Ga0209656_1000003152F009346AGGTGGMLFEEALTLASRDEGFKATVYAMNTLLIHKGIYTQEEFQSLFVEWVEKEQRRKVAEPRRTETSNAYSA
Ga0209656_1000003161F000214AGGMVMKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEIMSDMGKPALATAVNGPQATARLSVPAPPSIPAPQPVRAAGWEDTAKRWP
Ga0209656_1000003162F074116AGGAGGMRMWNAVLLLAALALGMTMTAAAKDNVMQGTIVSENSVQCGTQAKGKKQTTELMCQEYVIRTDATEYHVRQEKEGHKEMLPVNVPVELTIKKDRAKFKVNGKEYEMLVVSESAATAGGAPAAAPAPAPKP
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