NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209656_10000243

Scaffold Ga0209656_10000243


Overview

Basic Information
Taxon OID3300027812 Open in IMG/M
Scaffold IDGa0209656_10000243 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36657
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (97.56%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000272Metagenome / Metatranscriptome1408Y
F000801Metagenome / Metatranscriptome886Y
F004586Metagenome / Metatranscriptome432Y
F015363Metagenome / Metatranscriptome255Y
F016510Metagenome / Metatranscriptome246Y
F075195Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0209656_1000024310F004586AGGAGMTTTQQTKCAHLPCKCVARPDDKYCGQACKEAGSGEVEIACQCDHGTCPLTV
Ga0209656_1000024311F075195AGGAMGTCSDRCAKIRDLGFTASKQIKMYGERFEIVSDPFDEGDCIAVQATSGGDPVVRTVRLPIAILVGLADRFLKRPGAPATTTL
Ga0209656_1000024317F016510GGAMPHYVRMKSKELTLKQILSVRCMTCGAAVGEACELHTGAPRTEPHRDRKLSAAEAVENETGKG
Ga0209656_1000024318F000801GGAGGMASQAWTVKELIEALKKFPPEAPVYYEMGPNGPGTIRKAQYVRAYGEDDEMGVLLDR
Ga0209656_1000024324F015363GAGGMRTCRFALVFGLLAVAACVPLAPSAFGQIQSTISCPAGHGYWDVLSVMMMDPGLASSYHMEGITNGLPSSYVYTIWDQSQTKVYYVKNPQGNPWDINLYDSNYIYQWVTELGDWNGANHWNDPTSCRKLNNGSQKSTADFSMRWAARCVAPGGANSSFWNSPPPSSSNNTNYFTYVAQALQSHAQNLNYAFLEVETTSTMTITDHRANPPESFSITTLPLQYTYSCSVSGNVNSCQSREVFDYGVDTNVNPVDRVQHSYGWVRWRYYTNSTKGNPKAAPVWVLANTSTSDHLMPGEVNINFQCF
Ga0209656_100002434F000272AGGAGGMSQTVMDRTAEHIAESARQASRATSAVADAIEDGVGVVRRAAKQGGDAAEEFLNDTTQRIQRHPVLTVATTFAMGFTAGALLGWMIKRK
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