NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209656_10011379

Scaffold Ga0209656_10011379


Overview

Basic Information
Taxon OID3300027812 Open in IMG/M
Scaffold IDGa0209656_10011379 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5596
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008041Metagenome / Metatranscriptome340Y

Sequences

Protein IDFamilyRBSSequence
Ga0209656_100113795F008041GGALLRHKLFQPEEFGTSAHAAATIIFICPYSTPIEKVRFAIRRLLGAGYHVVAYQTTTAVFTEADPMILPELISQVRQDIRSRIAKLTSEGVTEFGFFGSSLGSFILYNCVGREIPELRWGVFNTGGNIAQGVWNMPTLREVHVARGWSLPRLEEAWAELQWPDFGRLDGCRFVFASSRRDSIAPLRNISRYLEPMLRAGAEVSVYEVPATSHRTTVIVGLWKGPQLVRMVSARSGL
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