Basic Information | |
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Taxon OID | 3300027812 Open in IMG/M |
Scaffold ID | Ga0209656_10094646 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1579 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002108 | Metagenome / Metatranscriptome | 592 | Y |
F011500 | Metagenome / Metatranscriptome | 290 | Y |
F055305 | Metagenome / Metatranscriptome | 139 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209656_100946461 | F011500 | GAG | MEILTPRAVRRSTRVRVEIPITVTSMDRKHPFSAKCTALVVSAQGCGFRASQALPTGTPVLLSDLPGGGNASARVASCLPLGQDGKQFLIGVSLYNHGNIWGIADPPEDWAVASDASAGPASLDKTAHKSKGSWPYNLFSGQGEAHPGRK |
Ga0209656_100946462 | F002108 | N/A | MSETSESVAVEASPSSLPKNQRPFRVKLRGSILALVRLPNRRQIRGTFHQLSTTGGLIHLEKPLDEKLVVELIFHLGDTTIREKIQMLFPMWATQGWLQPFRFIDLPEASRTGLEAGLALFMQGPANPTP |
Ga0209656_100946464 | F055305 | N/A | CNAGYNAITTTAIEDARILLKATKAKLVVVSGRIQTVHGKPIRQALQEIDPAVQLLTLEEDFATQDPGEAAEKLLIDVGSLLAPSN |
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