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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027813 Open in IMG/M |
| Scaffold ID | Ga0209090_10001928 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13179 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (15.62%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 73.2247 | Long. (o) | -150.2247 | Alt. (m) | Depth (m) | 67 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007770 | Metagenome | 345 | Y |
| F016956 | Metagenome / Metatranscriptome | 243 | Y |
| F023615 | Metagenome / Metatranscriptome | 209 | Y |
| F039679 | Metagenome | 163 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209090_1000192823 | F023615 | N/A | MNRFELEDAMSNLHLIGEDIDTIIYAIGDCPIKHTEDQLLNMLIGMKQLHDTRYQKMWDTFEQLIKNGTISDKNTEGL |
| Ga0209090_1000192824 | F016956 | AGCAG | MEQYQIKIQKDYKMINTIETWQAPKKVQLAIIDLAIAHIKKVISNPEVKTEGDNFDYWNSYDLGDGNYVDYNIYCGDDWCVLKQDGSGEYEFTDPSKWSWGVACYAVDPPTKENKYHQIDTDREQYLFSYNNSYGNFEVEFENE |
| Ga0209090_1000192825 | F007770 | N/A | MSGEGLTTSFRRTTQTTKSNKQLLREFQNIIYASRVTTHMKWYGEAESVQLIEHGDEELPKFQQEYVDIKDTFEFYISVSESWYKDADLYESHEVEDSFVSLARKFANDNALMYFSEGFPAEWIEQEIIDGEKNWNHFNVKPDDKNIDKICDVWYRYGIMKLQAFDEKVESQLWQDAKTEIKQLMEHEYAR |
| Ga0209090_1000192828 | F039679 | N/A | MEMSAKNSHLTIRSDLLEEDADISVPVRFLDYQEDDYVGDSATLNIDCEYSTDGEQLDDMAGYNIIVKITDSSKKDKYNNPWKDRLAFAISADFDWN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |