NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209090_10546967

Scaffold Ga0209090_10546967


Overview

Basic Information
Taxon OID3300027813 Open in IMG/M
Scaffold IDGa0209090_10546967 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)532
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050668Metagenome / Metatranscriptome145Y
F092720Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209090_105469671F092720N/ACFLAENGIKAHFILSRAIGDNRGDAEMKRQKLLALFADLKVPFSRWSKSAWLYDDNQGVLNMAEKLGIRTRNAVQLNLKLTKKA
Ga0209090_105469672F050668AGGMNTKEMILVLDTETCDLSGSVYDVGYTIADKKGNISVERNWLVAEVFTDAKRMMGAFYAKKMFTHYARMLNDGEVKLAAWSDIVEAMQADC

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