NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209742_10043650

Scaffold Ga0209742_10043650


Overview

Basic Information
Taxon OID3300027814 Open in IMG/M
Scaffold IDGa0209742_10043650 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-8_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1479
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001807Metagenome / Metatranscriptome631Y
F020342Metagenome / Metatranscriptome224Y
F043905Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0209742_100436501F001120N/AMTQDKSPINFDKTIAGFNVTERGIKSYSKSFSLGPFRLTLNARGSGVRGSISIPGTGLSKRNIKLI
Ga0209742_100436502F020342N/AMSAVTDNLNMFDRINLAACARRRASDNVLNSTRFEGEYDTARLWMKYRLVKYSTYSYIDE
Ga0209742_100436503F001807N/AMTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQATIELDPEEPIPLDEDGFCAYLDHLDPQWQLLDTSVGYPD
Ga0209742_100436504F043905N/AMQFQLPSNLQTELLAYDPTLKVLAKQTKTTPTKKSKYPLGNIPHLIPHNVVRESDQQAAIDHINQQKAPDRYKVFTTPVDVATPQARLKVIAILYHYEQVWYAAWLSPKQQADEYVYGHAYAFKNTAAAEKTAPHHIWTSKDKCIEHAGGRGVQTFTYSMNITKENIIGKDEHGYRHYQWRALNLCCQKGYQIRDNAVEAFEKSLRENIPTWEDSRGLFDRIRCKNIFDAIEMPK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.