NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209726_10008637

Scaffold Ga0209726_10008637


Overview

Basic Information
Taxon OID3300027815 Open in IMG/M
Scaffold IDGa0209726_10008637 Open in IMG/M
Source Dataset NameSubsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10882
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location NameS. Glens Falls, New York, USA
CoordinatesLat. (o)43.292222Long. (o)-73.604444Alt. (m)Depth (m)5.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000833Metagenome / Metatranscriptome871Y
F104532Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209726_1000863710F104532N/AMTPTLIWIDDPDNNGWACSNCPWKYPVPTFLSDPEARLAYDRLASLKFREHVCEIPVPHKDVEDTSTEPTFTKRVMKLLKVGYKPKDAVEIALNEVALEHRNDPKVMARAHAEAQDFLQRVREGKI
Ga0209726_100086375F000833AGGAGMSQTALRSALSIVLAMLLPGQLLAADSASAMLYANGTAWVNGSSVPKSAAVFAGDMVQTRPDSTAHLSASGSSVMVLADSLVKFQGPAVEIEHGAVRVSTAQGLATRAGEVTVKPAGNSWTEFQVTDVDGQVQIVATKGDVTVQDQQGTTTVQEGQQTTRDDTSNPEKKKKKKRRGAGAATAAGGGILSSSVAIYTGIAIVGGITTWVLLQHDDPLSPACPNNTCP
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