NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209990_10000242

Scaffold Ga0209990_10000242


Overview

Basic Information
Taxon OID3300027816 Open in IMG/M
Scaffold IDGa0209990_10000242 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55680
Total Scaffold Genes90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (87.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024719Metagenome / Metatranscriptome204Y
F042747Metagenome / Metatranscriptome157Y
F046192Metagenome151Y
F058947Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0209990_1000024212F046192AGGAMAKTIKTHTLLTDNSGAVWVEAELSEAQVKRVINSYKRAGIDLTPYGSPNQVSKQVEEINAFFTNDERSRPFVEAGKLQVIGVGF
Ga0209990_1000024220F042747N/AMREREKMLGYKYEDIQEFGATLKWAELYVPLSNTEAREGLVKIWDFFEGLLAEGYVEGEEIEV
Ga0209990_1000024229F024719GAGGVIELPNRGKITIVFYEVSDSQNIAIWGGENPVEALKWYRNSPAGSKIWVSQYEVDEEDAELMLDSVEITPIVLATITDSIDRWSR
Ga0209990_1000024289F058947GAGGMSITCELQDLDELMAKAGVLLTGNAYDRAQDFLQDNCACATYKYLIERG
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