Scaffold Ga0209990

Basic Information
Taxon OID	3300027816 Open in IMG/M
Scaffold ID	Ga0209990_10000690 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209990_10000690 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32649
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (20.69%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

32649

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (20.69%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F011485	Metagenome / Metatranscriptome	290	N
F038674	Metagenome / Metatranscriptome	165	Y
F060851	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209990_1000069020	F011485	N/A	MIKYINIIIATLMASVAVFAADTESPVNASINAGYNNHYIVNGLAKTGGQGFAGFNIGSTYFGVDGYVGGVILPDANNIDESHWNVGVGKALKVTEKFSLRGDLQVLRHQSSIVGGRNSIEIAPKIALVNPYLTPYIRGSHDFNLKQSGYIVGVERPTDVFGWVTVTPSVEYGKFTDYDVVAAKIGVSRTFFNHLTPYAEVGWYDNNFSASKYKFASQEFSGDIVATAGVRWNF
Ga0209990_1000069024	F001732	N/A	MNFKKIFAVFCLFLFTGCFSTIKPAKQIDDNQKIIAKEEKKVDNTLVEIEKNDKGKKIQTSGLSIGIQHSLNQVTNAPVQVDTALKLNERVISIVGSPHIDETKRIKATVDLLNSALVEERKKGEELLAQRDDLINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVVSALTTIVVFVIVFVLLRLLATVHPAAAAAFSIFNMLGSAIISILKALTPKAFEMCDFATKEKVDEFKSPLVKIIDVIQELKEKQKESPDRVYPLNELLKRFEKEMDSDEKDLIDDILREQKWIK
Ga0209990_100006904	F038674	N/A	MSMNRKGFFKTLFGGFVAASAAPSLVKAAETPQPPKDLALGREALRIDEHGNVGLGTNMPTTKLHVEGIIFHINDRMLEMAGDENGNFKIKWLNPKENETANTIVIHKPKDDPWKMNLKRIS
Ga0209990_100006908	F060851	N/A	MKAILEFNLPEDQRQFEMANQAADMVAAIGHFEDRLRSYIKYGHEFKSANEALESIRALLHEEINLRRINIHDC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209990_10000690

Overview

Ecosystem & Geography

Associated Families

Sequences