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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027816 Open in IMG/M |
| Scaffold ID | Ga0209990_10001343 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20869 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (31.58%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001018 | Metagenome / Metatranscriptome | 804 | Y |
| F002333 | Metagenome | 569 | Y |
| F002738 | Metagenome / Metatranscriptome | 533 | Y |
| F043890 | Metagenome / Metatranscriptome | 155 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209990_1000134311 | F002333 | N/A | MSIQAQTELHSAQALIYSRSNIRRAYPEFDDTAIAGIYLRGDNCIVVRHDGSEQSYDRTLIKARFQTYTNRLKDFFSYLGPNYRGPSVWHNNAYILFKGWHYTHALGHLTSNAKLQAHWADKFIHVSDPAKITALLQSDQTDLGHLVAPDGLRLPNRPLDMDTELDDSQEQQPLFGKPSCSCGSFQRQLNNLSAFQEEIEGFKPWCIHLTWFNKYRELLCKRTDVRNASPSGTPDKCVAWWYAPTADHVSDGRFVLLHTKSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYTPFPGTSLPQLKAAIKKQ |
| Ga0209990_1000134314 | F043890 | N/A | MQKTYLEDMLNLNSIEKLQIEYIDEEDGTGTIHIEWDDTDPDLQWWTDLGPEGQETFIIDALYAALECYVD |
| Ga0209990_1000134315 | F002738 | GAG | MSIDTYGLPSEQYEEFFEDNLQFSAKLYVKACQILRDNGAGAIDFKTTLDLYQEAIYGTNDDCRKYQKVNNPEAVKDNDLFGLTPSREELMEEIQAVNVKVEALVDYIARLVETTTDGLDRLAEAMDKDA |
| Ga0209990_1000134317 | F001018 | N/A | MAHITQTKLEDLNIIKLYEHYGALERSLPLLTPESQELAKAELECCANLRSEKIDRVHYAMAAHEDALERIKKEGDLIAQAKRHHESQLNQLKNLLGWLRRALPLDCNRIQGRNYEFVLSKKKDLTVEITSDPEFWHTDERKKYCIQQEVTTTKRIVVRSMSGEVLSDRTEPKTKTETLPNLDAIRNAYQNGEHLPTGVKVEQQYAIRKNRLFSTKWMEAQAPEYFGELLPEPDSAD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |