NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209990_10002431

Scaffold Ga0209990_10002431


Overview

Basic Information
Taxon OID3300027816 Open in IMG/M
Scaffold IDGa0209990_10002431 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14617
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001805Metagenome / Metatranscriptome631Y
F008811Metagenome / Metatranscriptome327N
F012447Metagenome280Y
F013987Metagenome266Y

Sequences

Protein IDFamilyRBSSequence
Ga0209990_100024311F013987N/ACLSPQKGLKHRLNYLKELVVMIKEEKHRILPALDRAHEEALRQGIISDLDAAGMAMAFTLAGVLDGGTLKPIEEVKYMGQLQQILDKYGLSLFGRKEKPELEVGEDPLDDLRKLNPENSDHTTSSPN
Ga0209990_1000243113F001805N/AMVGIDDQVIELKGADKEAFIADREATAETQRLLEAEYKAKQEARESAIKKLAEIAGLTKDELASIL
Ga0209990_100024317F008811AGGMTTTILSGRSLKLTIASVDYSTQILDSAINFDTERLTFDTLAGKAYKYIDSNVTLDITFLNDAGKTTPIGSLYKALWDATESAPDTALAFVMTLTTGVTLTGTVLPQYPGISGSGADAQTCTVSLQVVGIPTEDLTA
Ga0209990_100024319F012447GAGMAKAIQLVKVDKDYRGLLRAFGKMDDVAKTDMKKIASDLAERGANYARGAASRAPYNVRQAIAVADSIKISRSDKAPSFSIGGRAKVGSSAFSAGYVIMGNEFGSKQYKQFPRRSPSEGRGNRGWWLYPAMARFQPTIAKEWLAGFELIRNAWTGRI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.