NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209990_10006582

Scaffold Ga0209990_10006582


Overview

Basic Information
Taxon OID3300027816 Open in IMG/M
Scaffold IDGa0209990_10006582 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7671
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041487Metagenome / Metatranscriptome160Y
F062766Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209990_1000658210F041487N/ANGQENKKDPFLYNKVKRSYDVPLNSQLMGGGVKTILDDQKRVKIAKYIEKYPLGMTQKEFFENELGVNLNTTAKTEDNFWRTNRNGKVILTKEGIKLNLNQPLDMLKYLILLSNDKLISPSFDNRTDKATYEFMLVDESKVTVKKLEEASIKSKAYIKFAEITQSKKSTIGFIKSLGRAIPATATEDWLKNEILTIIEENPGAFLDMVNHPQYQEKIFVQEAIEAGAIIRKGDKRYTLDNGVELGDLTDTIGFLLNPENQETRLRIKAKVELANKK
Ga0209990_100065829F062766N/AMTANEMADELDQKLDRVDSYGGPGYEDFDYSSILTEAQHMFVKMFFDEMNNRKGKGFQEIEIRNQGLGALIQDAPSLTVSASQVGVFNNGTILGKFFDLPLDHMYTTYEECTIDKLKCGSTTDYIVAYITHVADNEIQRHDWNKYKKPYYKSYGDARVWRKEFRRSTTGILPSAAATAKRHELITDGTFNVTNYHIRYVKNPENIIVDRDTPTNQRNCELDYSTHPVILDLAMDLMLQRIKEQKMQIVEPFKALE
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