Scaffold Ga0209990_10015020

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209990_10015020

Scaffold Ga0209990_10015020

Overview

Basic Information
Taxon OID	3300027816 Open in IMG/M
Scaffold ID	Ga0209990_10015020 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4563
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028489	Metagenome / Metatranscriptome	191	Y
F064715	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209990_100150204	F064715	N/A	MSKVNTKQIKDVADKSEQIGNKAYDTFNKSGKIEAGKLAIAAFKNTLYANSLLIKNEKI
Ga0209990_100150205	F028489	N/A	MEMIGKELKIKYANDYSKFAVLPMNRAIDSKHVQKMIASMRKIGVVRTVITTTTNLIEGTMKTYIIDGQHLATALEREGLPIPYIERSVQSEEELIEIMAYMNNSSKSWDMMDFINAWKMIRPDYMKLFKWKNMYDIEVTMLAMIAINNIAIRHNTSIIKTGNFIITNPQAEQMCKAFNEIFIKIGNVDRPVKFQFLHAFLQAYSTYSHQKVMANLDKHIKTVKLIANSEESGAYIRKRIFNLPK

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