NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209990_10085522

Scaffold Ga0209990_10085522


Overview

Basic Information
Taxon OID3300027816 Open in IMG/M
Scaffold IDGa0209990_10085522 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1547
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F056605Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209990_100855221F001900GGAGLDNSGLLVQASSGLERMMYSNQSGPLKDSTVAQISAYVYYEAAVISKLTTNTQFRALFTKTMFDQINIDFGNYIDALARSKTKSLHHVYEWKKTGNKTARLFRLNKISEEGLSFRVNYDFIPSRSMVPASTGRRRHMFANKASIMEEGKPLVIRPKNSERLVFEIDGETVFMPKGKSVTVRRPGGSAATNQFTLAHSRFFSGRLVNESIKRSGFQKIFNSSVTKALSVPSNIKKVQYSFSPNLIRSQADAALAASFGGAM
Ga0209990_100855222F001229GAGMIDLVDSILSMNLDVYRQFEIQDPDTGAIVREWNYYKTIPCHAKGVISNSATTRSSDKQVFSNKYMNDQVIQVRTSERLTSREKVTNIKDAKGNTIWQEINYPNETPTVFEVVGTTPITDPFGTVIGYNSSMKRSENQQIGQ
Ga0209990_100855223F056605N/ALDNTVYTANGMVPPSIHDSAGIFKSGVSYKVQGYFGWEKVPDEVEQAAIELMKDFFAKDTVWRNKYVKKISTFDWDFEYTSEAHSGTGNAYADRLLADYVLVTKVEII
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