NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209990_10129579

Scaffold Ga0209990_10129579


Overview

Basic Information
Taxon OID3300027816 Open in IMG/M
Scaffold IDGa0209990_10129579 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1207
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F033308Metagenome177Y
F077285Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209990_101295792F033308AGGAGMTTAKQLTDELIYRMKTTDLNKFEIKREVGENWLPQGTVPFDLYASKGIATFTVWAESIQDAEHQVSQFLERDEDE
Ga0209990_101295793F002977AGGMKSQIPAEGIMQTNDWGDSRVYRVACGCGDENHNHNIWIEADQHDIIVTVYTTGKTNFWSKTRWYHIWTLLTKGYIDTESSVHLNKQQALNYAETLKSAITDVEEFRAKDKINRENGRRMTMIAQEGDCV
Ga0209990_101295794F077285AGGAGMNDDKLQRLYNNFLEFADHMCTENSPMEVAAIMMTQALTIYKSAMSEDEYNQMVDSISESRSKVKTFKRHSIQ
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