NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209990_10330286

Scaffold Ga0209990_10330286


Overview

Basic Information
Taxon OID3300027816 Open in IMG/M
Scaffold IDGa0209990_10330286 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)677
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004837Metagenome / Metatranscriptome421Y
F006621Metagenome / Metatranscriptome368Y
F012449Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0209990_103302861F012449N/ALIFPLLISSLTALAIAEYHVLPQWWYKTWFARHKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQVTNR
Ga0209990_103302862F004837N/AMTQDEYLLATKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYQEADQFAEANQQTFTHALTNQSPQR
Ga0209990_103302863F006621AGCAGMPSPTKAPNDEAQVQARMDSLMMVITTLCDCIGAVEESNSPNAFAVKMKIVDKIDSLIDKIEY
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