NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209811_10038103

Scaffold Ga0209811_10038103


Overview

Basic Information
Taxon OID3300027821 Open in IMG/M
Scaffold IDGa0209811_10038103 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1615
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062209Metagenome / Metatranscriptome131N
F069377Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0209811_100381034F062209AGGMRPLQALALVALILPCLAAPQAAGAQGKIDKAVQILEQQARAGRGEFVTFLMGAASAYRWDSAAPEPLDGPGAERLFCPPPWHSVDGKSYAKIALEEYRRSKSEYAALTEYPLDVLSLALQRGLRARYPCDAGRQASPAKSSPGG
Ga0209811_100381035F069377AGGALSLTATKPTFEAATVVALKMQNDTRRMEIRFVDDAGIEQVVSLPVLAAVELARLTLDASAFVTRLKDGPAPR
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