NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209811_10043410

Scaffold Ga0209811_10043410


Overview

Basic Information
Taxon OID3300027821 Open in IMG/M
Scaffold IDGa0209811_10043410 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1520
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014366Metagenome / Metatranscriptome263Y
F103861Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209811_100434102F014366GGAGMTRNIAGTSLQRSLLCVLCMLMLTVFGCQGRITEVIAGEEIPIPDKMTKNPDKAMEPIPGLEDGQVSYQGKVTPAEIFTFYQEIMAAKGWQPTARFSDKKDRIAYTKGSALVLIRYEEMPNGPTLLTISVGKQDLPK
Ga0209811_100434103F103861N/AFVIVAAFPVILAANTDLSSTEIGIGMLALTIPLITLHLLAHRFREQYKLTRPLETLIGCTLIVLSMVWWFVAASPHPTYAAIFPSLVLMGSGFGMIRLFGHMGVIKVTGKRWAATLFGTRTFSNHVGAAVGANIIGFVLPAMSRHVLSNDPQIAHEAALAAAVAVAVVVVSSAIFAACKDEFLGHEDPHWHKPEAPSLELNADS
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