NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10001260

Scaffold Ga0209039_10001260


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10001260 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24093
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (74.29%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000885Metagenome / Metatranscriptome849Y
F005283Metagenome / Metatranscriptome406Y
F015120Metagenome / Metatranscriptome257Y
F059669Metagenome133Y
F076450Metagenome118N
F079694Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209039_1000126011F000885AGGAGGMASAKAVFIGEVAQIAGVGAVVAGVVLSLHHWGAAAALLGGFAAFFVGKKLRGA
Ga0209039_1000126017F076450N/AMRGDSQGRSVQIGRYLNSPVALNVGVTSASVQLNPSRHYRLWGSVDLFFQFGPTGVTATLSSHPAAAKLDYLHYTDDANTTLAAIVSSGTGVLFISEIDAQGV
Ga0209039_1000126018F079694AGGAGMPTYQNATPPNTLYPGDVGYSWNNEAFPGVNTSGSQFALSTPGGYAPETGFTVRWQTIFGSAPSAISIKLQGAMADVDAEYQDMDASTQVAGEARQVTGVQAKFLRIKLYSSTGGSGLTAKILV
Ga0209039_1000126023F000188N/AMLFRSRSSEVLAKDTGRRDEFAEVEEEEQRRAEEKMSVKPEMAFDVCWEVYRGAREVLEAKRGITALTWEVDAKYSWRPDLRPKLKDWVADFALAGQAALEGPERASRMVLFRLYYLGLTPYERARHFLGLSERSWVNWSEEIRRRCGEELLRRDLFPPRKYFGGGD
Ga0209039_1000126025F059669GGAGGVNTYYTQPPWEFLLTASRNTLQSYELSRLAHAANLRKELGALLDQYLEENTAAMLARWLMDQRERTVLGEEAVSAPANSENKGRRASDNFLGDRIVSPRASRERA
Ga0209039_1000126028F005283N/AMVDLTQLQMQTLERLFEAGLRPVAIPPYESALCVHRGECAAVLAPVENGGLRLLAPATLMVDGNLSVRLKRAAGDVFEWKQKEVAATPERLKELEAFRAELVGILELAGKQ
Ga0209039_100012607F015120N/AMMTIQNLIRGFFRTRYVGLLEEEVARLRAENRALLNSLLGTAGFPPVEFAVPVKPVELPRLRKRSWQQMQMKKEQDAMKG
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