NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10001280

Scaffold Ga0209039_10001280


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10001280 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23851
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (95.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209039_1000128012F014894AGGAMRMSIGIPGFSIYFEHHQVKPFIKDHSRKAKDLFNERVVPSVLRGTCKGLEVVANNTADAHDYLIGKLKTKQSA
Ga0209039_1000128013F045709AGGVNLTPSQKGSFLAGVGLWLLIWASLWKADDIAGAMRIQRWFNSTRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLLLPCLEKLLRQRGTLNATLP
Ga0209039_1000128014F070426GGAGGMILELIVATEASALSASWIRRSRMRRQQTLMCGSTAEINLPFLDQYLRQQTPHPTRLQTFAAQKLAGVCRHVVHTRAFELMVLKLIQSASRRYRRESEISKVKVIL
Ga0209039_1000128015F036810AGGAGMTQPERTRVSAWTRLQSFAVGKYKAVQLSIERRSFERKLERIVRAADAHHSCGQLPGASQFKLLRKCADDLCANLAQRWDISPELLEAQIPAITKLKALADPPSKPRPTVLVTLGVAGAVALFFLMGVLAGLASVGYHLIGGR
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