NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000019

Scaffold Ga0209060_10000019


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000019 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)551180
Total Scaffold Genes471 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)297 (63.06%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000249Metagenome / Metatranscriptome1459Y
F000279Metagenome / Metatranscriptome1383Y
F000426Metagenome / Metatranscriptome1154Y
F000508Metagenome / Metatranscriptome1069Y
F001709Metagenome / Metatranscriptome648Y
F003117Metagenome / Metatranscriptome506Y
F003398Metagenome / Metatranscriptome489Y
F004328Metagenome / Metatranscriptome443Y
F006428Metagenome / Metatranscriptome373Y
F008825Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_10000019128F004328AGGAGVPDQPSTPSTAPASPSTQGPTIHIGDEFGTAKRNLPPVKILIYAIAGVLIIVGIVSFLQRAKPQGGGSLDNIAAVDLPGQNSTLVALTFTLRNSGQKSLWVHNVEAKVVTAAGEQSSDAVSAVDFDRYYQAFPSLKANTQPALSPEDKLQPGQQVMRTVLASFPVNLDAFNQRKSVSVVVQPYDQPVPIVLTK
Ga0209060_10000019148F003117N/AMPDRKMIIVRFIGATPSTAYCDVCRLAFRTRRELLTDADKAKQQLQDDFEKHECRPEESAVNEALTQIR
Ga0209060_10000019284F006428GGAGGMKRILWATLSVVMLFAALPAFAQNPNYDVGPVWRVVYYSIKPGQGEAFWKDFRENLKPTYEALKKEGILSEYKVWTNVTVDHPNDWDVALGLMFPNWAAMDQGDAKASTIIAKHYGSREAMLEAGKKRNELREVVASKLAHEVMPK
Ga0209060_10000019304F000279GAGMSHKAEPAATEEIILPENLLPLGSVLSEGVTALDVSMVLAKVFRVQHAEVALLRLDAGLLKFIFPEHLRTTGAIPISSKAIAAHTALSKKAEIFNNFARVKHASIFETIKPVGVEPEVSSSLAPIQKLMSVPILDSNSSVMGVIQISRKGLDARLTQDFSREDLHDLELAAGVLAASPIMHES
Ga0209060_1000001935F008825AGTAGGMDCVQLQQSLAEVEDGSSREQQAHLRACPACSALVRELQMIIFAAGELQEADEPSPRVWNTIEATLRQEGLIRPSRSVHFLPSFVERWGAARWLVPAAAMVLIAVGIVVHRQANPAPVAQQAAVILPANNLGGLNDDDLLQEVAANSPALRGQYEENLRRVNESIRDAQVLVDESPNDSDARRSLMDAYHQKSMLFEMAMDRPLP
Ga0209060_10000019351F000426AGGGGGMKDIHEVLRQKQTKYAQLGKQIEMLQQAAEKLREVAPLLAENDDEDNSVLMEGDEGSIAGDSMSAKAAVGAAASSASKATRPTAPRWP
Ga0209060_10000019374F003398AGAAGMTTSHTHTLSILEVCAQVKHLGYAASERVRLYGEEYEVVSDPYPEADGIAVQVTTRNDKHVRPLQLPATLIQSVKGRRAA
Ga0209060_10000019377F000508AGGGGGMMNQVVASLQKEYSRLQSEIERVGKALDALGHSGGKKKFRATRVLSKEARERIAEAQRIRWAKVRKAAAK
Ga0209060_1000001992F001709AGCAGMPQEISVSYQAIKSKVYRLIDSLVVGEKNEVEVQESIRRWWELIHPADRPIAQKYLLLVLERSNLALEAVEAGLAEATSPDMVPTHDSSKALKLVDRMVKQTTKHTGLGTPA
Ga0209060_1000001993F000249GGAGGMRNLLWILAFSIFFPAVGWTQNPGTAPAVQSSQDRFFLPRDTFWGWAQLDLAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMISGTLEVRPFGRGQLRRLMIFGSPTFLFGKTIPHTLYTWSPDAIGIEHSWGAGILIAKGFEFRMTQHFLFDRLGARDTYLGLADLGNNGPWGRYFTLGVRKSFGTRRW
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