NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000029

Scaffold Ga0209060_10000029


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000029 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)452536
Total Scaffold Genes439 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)346 (78.82%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F000781Metagenome / Metatranscriptome895Y
F000885Metagenome / Metatranscriptome849Y
F002750Metagenome / Metatranscriptome533Y
F002853Metagenome / Metatranscriptome526Y
F007488Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_10000029199F000188GGAGGMSVKPEMVFDVCWEVYRGAREVLETKRSISALKPEKAGKFLWRPDVKARLNEWVADFALAGQAALDEPGRASRMVMFRMYYLGLAPYDTARHFLGLSEMNWVNWSEEIRRRCGAEMLRRGMFPPRKYFGA
Ga0209060_10000029209F000885GGAGGMSNPKLVFAGEIAQIAGVISAVAGVVLSLHHWPAAAALLGGGAAFYIGKKLRAQ
Ga0209060_10000029211F002750GGAMEFLKRLLQSKYVGLLEGEVTRLRAENRALTNSLLGTAGFPPVDFPEAPKPQELPRTRRRSWHQIRAWREKEAARQSDAETVASDRS
Ga0209060_10000029215F000512N/AMTNGGLSAFVLQLRTMTHCIQVVRETHETPENVAHRLELAGGCNRFGGPNYRAVWGWNRLAWIGGKFEDRDEHGSLIRERIELRREPKYPAVNRWHIERWVPPETYGSPRAWYAQTNEIANGRCVAALGPYPSGGEYEHCFTLETPKGEFIQLTPTVAEYIATAIERSRSKPRARSREKLFDREAREERAYENWAFDLLDDATPAFHKLPFVTVS
Ga0209060_10000029216F000739N/AMNIARIELWLKGMLAAAISGAAGGVLTGFAAVGIDPTHFNLQAGIGATFRIGVAAALINSVIGVAAYLQKSPLPEA
Ga0209060_10000029223F000781GGAMLTVAQLVPLKNRDPYLYETLVKIVAAVNATSRRAGVDPSTPSPAPDPIASLTVRASNGWFDISITDPSNSRPGLFYFAESDITPGFNSPRVYFMGSSRNLYVQLGNQSLYWRAYSQYIGSLPSAPVTFGTPALPVSGGGITGPSPLPSQGSGALANGNAPGGNGFGIHPGSRITRNSAF
Ga0209060_10000029224F007488N/AMVLGFIRARALREILRFEIEMQIREYKPDDLDALKRIHEKQNFPYPFPDLQNPLFLTKIVLTDGEVNVAPGFTKVSSDRVLGAALLRLTAEAYLLLDPKAGTPKARWQSLLLLHEAARRNAWHRGLEDVHAWLPPAIARKFGRRITQLGWQRDDAWTPYCLRFGKQHDQI
Ga0209060_10000029225F002853GAGGMGRGAQDQTRQLTDQQLASINALNQQFLGQQQQVGSLLLPQYQSILKNPGLSPADKAAVTNDSQGAIGSAFDSLQQSAANRAARTRNSAGFADLEDDLARQKGIAEGNQAQQNQLAFANTAFQRQLAALQGLSGLYGVDSNLLARGLGIPAELLNVRANSSRPSGFFSSLGSTLGGTLGALPEALL
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