NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000173

Scaffold Ga0209060_10000173


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000173 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)158009
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)105 (73.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000138Metagenome / Metatranscriptome1954Y
F003916Metagenome / Metatranscriptome462Y
F008200Metagenome / Metatranscriptome337Y
F054948Metagenome / Metatranscriptome139Y
F064949Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_10000173104F054948GGAGGVPYDTDYYWVVSCKNRRFHHKNNTSYEHLILLGETDSFASPPMLPELLKVRCDSCGEEHSYKRKEVLRAEVGVPDQFAPHPAFK
Ga0209060_10000173115F008200GGAMTEFAILTNRKRALIALIHSVVFLGIASQGFVSPKAGLLHAVRTPDMVLAGIYVIVAVILAWLVGISRGIRERLYFALCVCSASSGLLRTVFGDAALPAAQYLRVGMLVSAVCVGTWIWRSFGRVVADAVPD
Ga0209060_1000017320F000138GGAGMHMQIVNQFHAPFSTLISYIPVIATIVTTFFSIVLARATLRYVEATDKGLALAREEFEREWSPDLHIKMERISSSEARIIVTNLAKTSVLLQLLQLRKLSHAMPFERCRVNDPLVGGMTWTQEMGRRIIACTGHEFDGPIAASMTFYAAGRMYRTDWFRSQIQVRDGRIIRLEPSNMPTRRVRTIERKGPERRREFAQDVLGDAEPQKGESKPDEQFFVTGA
Ga0209060_1000017345F064949GGAGMLVFESLSAGAIAIGIGLASVLIVIGLYSVVVWPLTFWDMASLGLEKYSSWTNTILWSIFAGGSLAGYWCFSGAAFRDRSKNKRSAPGRSPR
Ga0209060_100001735F003916AGGAMNRLTGALIAYVVLGVLTYLTIRDPRIKGITLAVLALFAVKSVLRRKDVLHPDKSGEQE
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Institute for Fundamental Biomedical Research
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