Scaffold Ga0209359_10040527

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209359_10040527

Scaffold Ga0209359_10040527

Overview

Basic Information
Taxon OID	3300027830 Open in IMG/M
Scaffold ID	Ga0209359_10040527 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1764
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-38.0018	Long. (^o)	-44.9985	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044142	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209359_100405272	F044142	N/A	METVLLDFDRIKIIEPHETDSVFITLESMRKLWLQRTNWHPALEIGGEDSGIEDYVHYYTLGSTLYMDARDRGWKSYKNLSEMYNRVLIKKLGWLYERFIFELSEYLGECKYEDDLALPGFHIYEFGAAPDKRKHHRCLHYDGQWFYGRNYFKEKYTNIDFRNQLSYTFTIKVPHNGAAIALWDLPDNKRKKAESIQSRFPHDVIDRYQTLDYVKEIKDNKTIEDPWKFKLFDEDCGDLEQYMPVVIPHLEGHSFYYYGMIMHQMILGDDFNRGDYRITFQGHGLKCDGIWRLFW

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