NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209359_10052220

Scaffold Ga0209359_10052220


Overview

Basic Information
Taxon OID3300027830 Open in IMG/M
Scaffold IDGa0209359_10052220 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1596
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-38.0018Long. (o)-44.9985Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001026Metagenome / Metatranscriptome802Y
F002137Metagenome / Metatranscriptome590Y
F014025Metagenome / Metatranscriptome266Y

Sequences

Protein IDFamilyRBSSequence
Ga0209359_100522201F014025GGAMNQLDNYELSTIHYTISYYIDNANLDEDENEWLNLLKEKVDSIMESQAKYDMECG
Ga0209359_100522203F001026AGGAGGMAKHTLVLDDLELTALITHLEGESEMMVESRLNCSNPSELPDREEVLLNLVYAKAFTLGYEADKNPKVDFNLIQNQDRIYKYKSFK
Ga0209359_100522205F002137AGGAGMKVRELIEALSHYDDDDDVTFYFLKNDTLTNCQLEDIGFYLDMGVEFTIQDTSEVMEEVD
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