NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209359_10156290

Scaffold Ga0209359_10156290


Overview

Basic Information
Taxon OID3300027830 Open in IMG/M
Scaffold IDGa0209359_10156290 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1002
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-38.0018Long. (o)-44.9985Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014025Metagenome / Metatranscriptome266Y
F058219Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209359_101562903F058219AGGAGMSKSKKQLKKDLKYLKKHLDDNKDINQIIEHTTKIGISSEYFCEEFVFIPDGETPEETARFHDVEYLDITEFNYHHWIGNKMEDY
Ga0209359_101562904F014025N/AGRKKXMEIIMNKLDNYELSTIHYTIGYYIDNANLDEDENEWLNLLKEKVDSIMMSNIKYESECG

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