NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10012843

Scaffold Ga0209092_10012843


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10012843 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5997
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.26%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F037230Metagenome / Metatranscriptome168Y
F051139Metagenome / Metatranscriptome144Y
F072257Metagenome / Metatranscriptome121Y
F076593Metagenome / Metatranscriptome118N
F092077Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209092_100128431F076593N/AMELTEHQKNELDAVADSVAHYIEDHLRETINWQMPDSLVDELHEDQFMDAMGYAYEKVLQLITE
Ga0209092_1001284310F037230N/AMKNLTEEYVNIDWSGICEDFDLDYGDITPEQSFEIDRALGNINEVLHEFIEQNKPKVHIGQTTLTSTEHNVLMVALDHMYEHLNDLVDDRESFEEKNIILKRKVAVKSLKEMFNL
Ga0209092_100128435F005129N/AMTYKVKIAEVNKSFSLAHHSYIDLGVFTVNASTYSFLYPAVKTDWACDINDTELEFLVNNKKCKYVGFKELYIQLYGNSFATFEADLIRQIEEEVAKNIIEEFPGTDVNF
Ga0209092_100128436F092077N/AMNKDLSPLQRSFERINELIPHSHDVLLRCSLYEMCVELTNKSFAEGINTKY
Ga0209092_100128437F072257N/AMQELDKVVHQWCDDNDRWMYIEYDRDGMVMGLNFMQGDEYELFKESWCVSDQGMTDFYKQMLYTFAYEQKNVPEHCFINSCMWAYHSAISSRDEYAEPTPCHRQCTIYKTNTTVNR
Ga0209092_100128438F051139N/AMQTAKLKLPVKQFHQLYDLLGDVLDHEAETNDFNMDNSDIDLLEDIRHELFNQIPDEVPVKITYAFTAVSGATNITPVKLYEVTNRDSGGGFLITNDAGREIYCIEKGCSHLSRLGSKNWKLFTTTND

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