NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10023585

Scaffold Ga0209092_10023585


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10023585 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4082
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016326Metagenome248N
F036433Metagenome170N
F056069Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0209092_100235851F016326GGAMMYKKKNIAGEMGARASQPAKRRQTVDPLERANQKMEGRMQGGNPKKAKRKSMMN
Ga0209092_100235855F056069GGAGGMIKKSKTVNKRVMQKIVDKLAEGITLTEICQDASMPSYRSVTRAVQLDEELWELYRKGRVQQAEFYTDRINQLAMSPLPDVDDQRKLHAEVNRRKLEIETLKWTTARNQPHGVRDKKEDAPQQQAITISWAGGDVDVSADGA
Ga0209092_100235856F036433AGGMVKKKKKAKPLNEARSRADHGTPEAMRQADGVQFETVDGGRLGSVKRAYISRQTPMDRYKARGLVTQRQYDAAHAFYVLYDKTRQAGRVTSNYDRIIVDGGSGGGINEYAFSDYIALSQKLGMDYVSVVRAVVVECESAGDWAKRYRLPSRMGIEKLRDGLDKLAKIMGVS
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