NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10083786

Scaffold Ga0209092_10083786


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10083786 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1913
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015151Metagenome / Metatranscriptome257Y
F022016Metagenome / Metatranscriptome216Y
F055210Metagenome / Metatranscriptome139Y
F076507Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209092_100837861F076507N/AKEKGMWRLVEQLERDLERRELLKMPALEAVKEKDARMVWEEEVDDWAD
Ga0209092_100837863F055210AGGAGMLDLNTTFSAPGSVVTPMLRSFMSTFQVGIRNRDAVSPVSRNMYVKAFGSEEAVGIASLLIKPYDMVVTGVMSAGSEGYGEEDVSDADPLPLLKSKGEPVTDDLFGF
Ga0209092_100837864F015151GGAMITLKNGLIISADNDGFESYNHLTSKIDPKSFTKFKELPDIFYKEMGSDDRTLLTKVDNPELATILQRTKRYGI
Ga0209092_100837865F022016AGGAMAFEMYKTHKLSDHLESEAYDHCQWAIAGFYDLELTENEYGYEQGVEEVLTIEQINEIEAYVDEWSSPNKWHEPYCISALTTIIDRWYEENEVLTDEP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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