NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10116740

Scaffold Ga0209092_10116740


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10116740 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1567
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035491Metagenome172N
F089429Metagenome109N
F099988Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209092_101167404F089429GGAGGMKAKDINIYSIFSRTYKKKMFPFMDFLEIGRLKKDKTIRQVSNVYQFPIHQYYNQKRRVK
Ga0209092_101167407F035491GGAGGMNLRTKATWELRQIVKALSLPISSFLNTDEDVERLEQAQIVLYERRRKNTQSIKMEVKXISN
Ga0209092_101167408F099988AGGAGGMKTEYILYGLKLNEPDYLESIIYTSFNRNEIDKVKTLAIKKGYVKFRVATFNGEVPNFNDPKLINMEVI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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