NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209092_10290836

Scaffold Ga0209092_10290836


Overview

Basic Information
Taxon OID3300027833 Open in IMG/M
Scaffold IDGa0209092_10290836 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)887
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004103Metagenome453Y
F041190Metagenome160Y
F051462Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0209092_102908361F051462N/AMTGKQVEGYIKYTLQKTPRHDVNALASAVTDMAEELDHDECELLYLLLENRPIDA
Ga0209092_102908362F004103N/AMRLIDQVKPEILYALAESKINYSSSYRSIIASLSSADRYRQLSIDQVDQLITFLPRELHPNGRTDFYYGDYLLQKKYQL
Ga0209092_102908363F041190N/AMNAKDLELKISGLEKAIQEHKADASRYEDTLKTTLKQLEDINKPEITPLQFDLIQEAIERGVDEFSFDDEGNYDKEFGINYDGKVHLESLDLTCTYELVEMITSRVHKLFAEAECPEEDDNSQVNNATHVEKVI
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