Basic Information | |
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Taxon OID | 3300027836 Open in IMG/M |
Scaffold ID | Ga0209230_10006559 Open in IMG/M |
Source Dataset Name | Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5059 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Lake Ontario | |||||||
Coordinates | Lat. (o) | 43.933506 | Long. (o) | -78.003845 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000311 | Metagenome / Metatranscriptome | 1326 | Y |
F004051 | Metagenome / Metatranscriptome | 455 | Y |
F085262 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209230_100065591 | F000311 | AGAAGG | MYFELTAPDRLSMERAYWDAQITGLDPVAMSALTFNIGTGSIEKVSRLRDKYNLIESYTSEHEPTEIYNRR |
Ga0209230_100065597 | F004051 | GAG | MTIQDKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPNKETRWTSVSASTLAE |
Ga0209230_100065598 | F085262 | AGGAGG | MSNVYEILAEWHPSGDFTESDLWDAIAESEGVDVYSIMDGDLTDYL |
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