NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10001100

Scaffold Ga0209089_10001100


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10001100 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24611
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (53.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005400Metagenome / Metatranscriptome402Y
F042009Metagenome / Metatranscriptome159Y
F073643Metagenome / Metatranscriptome120Y
F092712Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209089_1000110013F073643GAGMLSVLVTFENVETVEEFLARGNKIEKSEKVLGSKSLNLFSRYSANYRAGSGKTRMGKNGSGKFRMSESYTSIKHLSA
Ga0209089_1000110016F042009AGGAGMICSNCGKRILKGSIDIGHRWNLSEDLAFACSEKCAKEAPKNWLSDSPASILSKNKFKKE
Ga0209089_1000110026F092712GAGMISFGKYFDDQHDAIVKAMQNKNKQLNVEWMEAHEKREQLKDYNHRMSIRNPVDTHKI
Ga0209089_1000110032F005400GAGMSNIQPQLGKNHNGFKDLTHTNMCYRCDWCDQGYNQIYWLNQIAMEYYICDNCQRYYRLTTQDLIELQYVETREQWRDADCWPNRGFFPYPIGFDT
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