NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209089_10005011

Scaffold Ga0209089_10005011


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10005011 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10919
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003827Metagenome / Metatranscriptome466Y
F005883Metagenome / Metatranscriptome387Y
F025767Metagenome / Metatranscriptome200Y
F054930Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_1000501116F005883AGGMQIQVSGVSGMVYRRGHQIVLMNTETDKKIAVKVIQYDSKQGWLAENGEGDWSWYRELRQDSDPTDLQYWTYVKKVGT
Ga0209089_1000501119F054930GGAGMIQKERVMTKEDKKLRMVKEGEGGGAPTPVSKLDDEELTSLSMGKYKVFTNGAEEKDLKGKYLAVNTDHLVSVFPIEDKTVLFSAGGNSWTVAEDFATVLKRLNDWY
Ga0209089_100050115F003827GGAGGVAEGLWADWQVKLIAENMSEKCPKREWFDDEGRPEGYATSLKSWSHITARQLYSMELEERQLIIFIHHLGIEHVGMQTFDPQDTRQLTDFKPHEGR
Ga0209089_100050118F025767N/AMEYRMINPETVKAEDVSCSVADMETLKQEGWVMMFTPNRNSIISSRDHSGQGGGHGTSDGWKDVLRRIKANNPKSTIDV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.