NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209089_10006001

Scaffold Ga0209089_10006001


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10006001 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9896
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004880Metagenome / Metatranscriptome420Y
F007003Metagenome / Metatranscriptome360Y
F082802Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_1000600110F082802AGGAGMTDIEVFKQVTDIATLDKAQIAKITARLPEYKRGSSIIGHSTSQSSYSLQTMQMISDSPLSRMKQCLAQIDKKYKAIQEAYYSIEKKKLTVEKLRKDTNEHSRLTVEEYTSQIESITMLMNTSLREIGMFQDMYDAIKKNNNIPDNWTEKDYESQEISHMVKASFRLAVQDLSSTGRVGKAVVEYWEQLGIHPQLAESKTRSYLVLIQEKINSSAKVTIRDMYDFLDDMAEEFKDSYQDALSRMGLDELGSEEFMAHGATKPQ
Ga0209089_100060013F007003N/AMIHYFTKNIDEKKYNDIICRTIMINGHDGTNNSGYKAWQNFEENWTLNIIPVTDQEDFKVYYEHLNVETSDGIAWGVTGKKVIYMFVNDIKNPFIIRQNIMPLGHELLHAIYQDAVGTHHITRKYDSPEGRANTRGAAATVIVHDNWYGTKKTIKIWIRWGFIWLPITIPFIPVKEAKKEYSV
Ga0209089_100060019F004880GGAGMSQEFKDHVEQGEEYTCDKCNETKLDANEYDQYIIMQYHYCKPCWNYVHLKKGTCDKCGSSMTNRSESETIFIDCDCGNKVELKW
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.