NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10007621

Scaffold Ga0209089_10007621


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10007621 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8562
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005103Metagenome / Metatranscriptome412Y
F011155Metagenome / Metatranscriptome294Y
F011704Metagenome / Metatranscriptome288Y
F015261Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_1000762117F011155GAGMLENAVEAVGNFDVAMDGLYVIREGAFGFLTDAKESPYPWMFAAAYVAGALPLALVFFGFQWIECEIVQCGLVSLGG
Ga0209089_1000762118F011704N/AMNIDNFQELIDLTDYLAVSEEYLIRKFTEGGNYLIIDTYGDFLILERDEVDTVFSIIWNDLYGPISEEIPHILN
Ga0209089_1000762121F015261AGGAGMPVNIVWEDGDATVSILCDGCDKEYEIISKDTAGLEMCSFCGHYLEVESETGETNESEEDSWD
Ga0209089_100076214F005103GGAMKEEDNNIQIFINKKEMPYSHQNMARAINSFLPYLTNIDLTELGQDILDLMDHREKKESESKIEVAKHSWPYPDTINREEV
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