Scaffold Ga0209089_10010414

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209089_10010414

Scaffold Ga0209089_10010414

Overview

Basic Information
Taxon OID	3300027838 Open in IMG/M
Scaffold ID	Ga0209089_10010414 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7101
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Pelagibacter phage HTVC010P	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)		Depth (m)	177
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032037	Metagenome	181	N
F071635	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_100104141	F032037	N/A	MWDYVQDDLTSVVYISEKDHSLTIKVYGFKSDETAEAFAHYTMSILNFDYNISGYGMTSKRLH
Ga0209089_100104149	F071635	AGGAG	MAVTTQNSTEYAATIATPLVKAGTTGDKGKLRTLAFTFNQSGVGDAGSMIRLGKIPAGNVKIIGGLSRFYCNIVASSATIDIGWEAYNDANGTAVVLDVDGMVDGLDVDTVGYQDMEGNTAATKLLGGNHTFSSNDGVIITIKSIAALADDDDVDGVITYVLD

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