Basic Information | |
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Taxon OID | 3300027838 Open in IMG/M |
Scaffold ID | Ga0209089_10011270 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6785 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (56.25%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 73.2247 | Long. (o) | -150.2247 | Alt. (m) | Depth (m) | 177 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000615 | Metagenome / Metatranscriptome | 984 | Y |
F001048 | Metagenome / Metatranscriptome | 793 | Y |
F002874 | Metagenome / Metatranscriptome | 524 | Y |
F010791 | Metagenome / Metatranscriptome | 299 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209089_1001127010 | F000615 | GAG | MCRIRCFYECSDGKMGFAEMVVSYDEDIAGLIRHWGTGGRMVITEHVDLV |
Ga0209089_1001127013 | F010791 | GAG | MSFEFRAGRKRVVKTVETVEEANKLMRKMIAIRNENFLWENIDVKTGHLRAVDELEKVMGAIFDVFNTMSIYVNGKSVRRIWSRGF |
Ga0209089_1001127014 | F002874 | GAG | MEEKIDLSLNRSLSELESSYWEFTEETEGEDSSEWSGSVQEDFSALEGYLMKMDIL |
Ga0209089_1001127016 | F001048 | N/A | MKIKSKKHFWWRFNHLKRNGGEIIVTDRTPEMDVKDFNRIELLVNKRVRWEIGSEGMAIWNACGVKDIPTLAKAYGIK |
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