NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10020886

Scaffold Ga0209089_10020886


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10020886 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4597
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002980Metagenome / Metatranscriptome516Y
F032809Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100208862F002980N/AMNKLLSLLLLTGTLFAQANSIFTLNPSVHSAGAGNSGIADLNSKNLFHNPAFAGLESHQETSYVKWLPNLTDDMGYQNLQYTSGMGFSVEVFYFDYGTQTAADIGGIITGEFDSSSLRVGGSYAMELGDWLLGARLNLYNHTFIDDIDIDMNYGVDIGAYKVFGNTSLGLVLKDLGGETKFLDQSTSLPMSLGIGIKQSFGSFSLLSDIKLFEDYSSFGVGGEYLLGEVGNLRLGYYSEPEFNVDYITIGGGINTNVVDISLAYLYNTESFHNETLMISFGFDF
Ga0209089_100208869F032809AGGAGMKKLWLIVLLIGLVNAQMPEPTMVGQDKLQIPTLSINNFVNQAEIEGLEDTRVFLGITNILTEN
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